MathJax, Jekyll and github pagesIntegrating MathJax with Jekyll is a very convenient way of typesetting mathematics in a blog hosted on github pages. There are a few guides online, which we...

On the relation between maximum likelihood and KL divergenceIn this post I describe some of the theory of maximum likelihood estimation (MLE), highlighting its relation to information theory. In a later post I will de...

Installing NEURON with python and NeuronvisioSince it took some time, I’m going to describe the steps I took to install NEURON with support for python and the 3D visualization tool neuronvisio. I’m runn...

Path integrals and SDEs in neuroscience – part twoIn the previous post we defined path integrals through a simple ‘time-slicing’ approach. And used them to compute moments of simple stochastic DEs. In this f...